Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs34298599 chr2:178800157 A/G 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs34317593 chr15:82546642 C/G 1.48E-12 482 29.63 35.67 29 KM Plot
PRAD rs34318111 chr7:6760394 GA/G 7.08E-5 480 30.93 30.27 42.42 KM Plot
PRAD rs34348385 chr7:6717416 C/G 4.02E-7 488 31.07 26.7 50.03 KM Plot
PRAD rs34355087 chr2:178805693 CT/C 4.14E-5 494 30.78 32.28 20.48 KM Plot
PRAD rs34362113 chr8:143423585 A/G 0.000123 487 30.3 30.78 31.87 KM Plot
PRAD rs34364045 chr1:68267614 AG/A 0.000158 489 31 29.13 36.87 KM Plot
PRAD rs34369840 chr10:82326469 G/C 1.71E-6 487 31.28 27.03 20.18 KM Plot
PRAD rs34383309 chr11:129945412 C/T 1.17E-5 492 30.87 33.13 22.67 KM Plot
PRAD rs34392194 chr16:5003124 A/G 4.86E-5 474 31.27 29.63 27.77 KM Plot
PRAD rs34392598 chr7:6763006 C/T 3.74E-11 487 31 27.77 38.33 KM Plot
PRAD rs34407109 chr7:43639000 T/C 6.0E-5 475 32.32 30.75 15.87 KM Plot
PRAD rs34417965 chr2:131713777 A/C 1.37E-6 487 31 31.4 19.3 KM Plot
PRAD rs34418116 chr8:71552466 G/A 4.75E-5 492 31.08 31 24.27 KM Plot
PRAD rs34418807 chr8:54165372 G/C 2.73E-6 492 31.32 26.93 49.93 KM Plot